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All ELIXIR events (Expanded)

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# Event code Title ELIXIR Node Start datesort ascending End date Duration Event type Funding Organising Institution/s City Country EXCELERATE WP Target audience Additional ELIXIR Platforms involved ELIXIR Communities involved Number of participants Number of trainers/ facilitators Url to event page/ agenda Main organiser
1001 6077 Label-free quantification with OpenMS - GCB 2018
ELIXIR-DE
25.09.2018
 25.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Tübingen
Vienna
Austria
Academia/ Research Institution
NA
Proteomics
Metabolomics
6
2
https://www.denbi.de/training-archive-sorted-according-by-date/131-label-free-qu...
 ELIXIR-DE
1002 6078 SeqAn3 – a modern C++ library for efficient sequence analysis - GCB 2018
ELIXIR-DE
25.09.2018
 25.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
FU Berlin
Vienna
Austria
Academia/ Research Institution
NA
NA
7
2
https://www.denbi.de/training-archive-sorted-according-by-date/132-seqan3-a-mode...
 ELIXIR-DE
1003 6079 Cloud Computing Tutorial - GCB 2018
ELIXIR-DE
25.09.2018
 25.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
CeBiTec
Vienna
Austria
Academia/ Research Institution
NA
NA
20
7
https://www.denbi.de/training-archive-sorted-according-by-date/134-cloud-computi...
 ELIXIR-DE
1004 6567 Data Carpentry in R
ELIXIR-UK
24.09.2018
 25.09.2018
2.00 Days
Training - face to face
ELIXIR Node
University of Cambridge
Cambridge
United Kingdom
Academia/ Research Institution
NA
NA
32
4
https://training.csx.cam.ac.uk/bioinformatics/event/2651178
 ELIXIR-UK
1005 6181 Elixir Training: Plant Genome Assembly and Annotation
ELIXIR-FR
ELIXIR-NO
ELIXIR-SI
24.09.2018
 28.09.2018
5.00 Days
Training - face to face
EXCELERATE
Elixir-FR et CIRAD
Montipellier
France
WP10
Academia/ Research Institution
NA
NA
24
8
https://elixir.mf.uni-lj.si/enrol/index.php?id=33
 ELIXIR-FR
1006 6076 Deep Learning Bootcamp 2018
ELIXIR-DE
24.09.2018
 28.09.2018
5.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
CSBD
Dresden
Germany
Academia/ Research Institution
NA
NA
34
6
https://www.denbi.de/training-archive-sorted-according-by-date/139-deep-learning...
 ELIXIR-DE
1007 5776 Genome assembly and annotation course 4
ELIXIR-BE
ELIXIR-FR
ELIXIR-NO
ELIXIR-PT
ELIXIR-SE
ELIXIR-SI
24.09.2018
 28.09.2018
5.00 Days
Training - face to face
EXCELERATE
CIRAD
Montpellier
France
WP11 - eLearning
WP10
Academia/ Research Institution
NA
NA
23
9
https://elixir.mf.uni-lj.si/course/view.php?id=33
 ELIXIR-BE
1008 6143 Single cell RNA-seq data analysis using R and command line tools
ELIXIR-FI
21.09.2018
 21.09.2018
1.00 Days
Training - face to face
EXCELERATE
Center for Scientific Computing (CSC) - IT Center for Science
Espoo
Finland
WP11 - TtR
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
NA
NA
26
2
https://www.csc.fi/web/training/-/single-cell-rnaseq-r-2018
 ELIXIR-FI
1009 6566 Introduction to metabolomics for microbiologist
ELIXIR-UK
19.09.2018
 21.09.2018
3.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Birmingham
Birmingham
United Kingdom
Academia/ Research Institution
Industry
NA
NA
7
5
https://www.birmingham.ac.uk/facilities/metabolomics-training-centre/courses/int...
 ELIXIR-UK
1010 6142 Single cell RNA-seq data analysis using Chipster
ELIXIR-FI
19.09.2018
 19.09.2018
1.00 Days
Training - face to face
EXCELERATE
Center for Scientific Computing (CSC) - IT Center for Science
Espoo
Finland
WP11 - TtR
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
NA
NA
24
2
https://www.csc.fi/web/training/-/single-cell-rnaseq-2018
 ELIXIR-FI
1011 6071 de.NBI - CeBiTec Nanopore Best Practice Workshop 2018
ELIXIR-DE
19.09.2018
 21.09.2018
3.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
CeBiTec
Bielefeld
Germany
Academia/ Research Institution
NA
Plant Sciences
14
7
https://www.denbi.de/training-archive-sorted-according-by-date/135-de-nbi-cebite...
 ELIXIR-DE
1012 6072 SeqAn User Meeting 2018
ELIXIR-DE
19.09.2018
 21.09.2018
3.00 Days
Knowledge exchange workshop
Non-ELIXIR/ Non-EXCELERATE funds
FU Berlin
Berlin
Germany
Academia/ Research Institution
NA
NA
12
2
https://www.denbi.de/training-archive-sorted-according-by-date/128-seqan-user-me...
 ELIXIR-DE
1013 6073 OpenMS User Meeting 2018
ELIXIR-DE
19.09.2018
 21.09.2018
3.00 Days
Knowledge exchange workshop
Non-ELIXIR/ Non-EXCELERATE funds
University of Tübingen
Berlin
Germany
Academia/ Research Institution
NA
Proteomics
Metabolomics
21
2
https://www.denbi.de/training-archive-sorted-according-by-date/129-openms-user-m...
 ELIXIR-DE
1014 6074 de.NBI - KNIME User Meeting 2018
ELIXIR-DE
19.09.2018
 21.09.2018
3.00 Days
Knowledge exchange workshop
Non-ELIXIR/ Non-EXCELERATE funds
University of Konstanz
Berlin
Germany
Academia/ Research Institution
NA
Proteomics
Metabolomics
9
1
https://www.denbi.de/training-archive-sorted-according-by-date/137-de-nbi-knime-...
 ELIXIR-DE
1015 6075 MASH User Meeting 2018
ELIXIR-DE
19.09.2018
 21.09.2018
3.00 Days
Knowledge exchange workshop
Non-ELIXIR/ Non-EXCELERATE funds
Leibniz Institute for Plant Biochemistry, Halle (Saale)
Berlin
Germany
Academia/ Research Institution
NA
Metabolomics
5
3
https://www.denbi.de/training-archive-sorted-according-by-date/138-mash-user-mee...
 ELIXIR-DE
1016 6135 From reads to disease variants
ELIXIR-ES
17.09.2018
 21.09.2018
5.00 Days
Training - face to face
ELIXIR Node
Non-ELIXIR/ Non-EXCELERATE funds
Broad Institute, Fundación Progreso y Salud (FPS)
Seville
Spain
Academia/ Research Institution
NA
NA
30
7
http://courseswiki.clinbioinfosspa.es/gatk2018/
 ELIXIR-ES
1017 6070 6th Galaxy HTS data analysis workshop
ELIXIR-DE
17.09.2018
 21.09.2018
5.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Freiburg
Freiburg
Germany
Academia/ Research Institution
NA
Galaxy
25
6
https://www.denbi.de/training-archive-sorted-according-by-date/136-6th-galaxy-ht...
 ELIXIR-DE
1018 6269 3C-data Analysis and 3D Reconstruction of Chromatin Folding
ELIXIR-PT
17.09.2018
 21.09.2018
5.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
Instituto Gulbenkian de Ciência / BioData.pt
Oeiras
Portugal
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
NA
NA
11
5
http://gtpb.igc.gulbenkian.pt/bicourses/2018/3DAROC18/
 ELIXIR-PT
1019 6565 Data Manipulation and Visualisation in R
ELIXIR-UK
14.09.2018
 14.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Cambridge
Cambridge
United Kingdom
Academia/ Research Institution
NA
NA
38
3
https://training.csx.cam.ac.uk/bioinformatics/event/2651197
 ELIXIR-UK
1020 6213 BYOD Registries
ELIXIR-IT
ELIXIR-NL
13.09.2018
 14.09.2018
2.00 Days
Hackathon
ELIXIR Node
National Centre for Rare Diseases, Istituto Superiore di Sanità
Rome
Italy
Academia/ Research Institution
Non-Profit Organisation
Healthcare
NA
NA
27
8
http://old.iss.it/cnmr/?lang=1&id=2795&tipo=3
 ELIXIR-IT
1021 6564 An Introduction to Solving Biological Problems with R
ELIXIR-UK
12.09.2018
 13.09.2018
2.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Cambridge
Cambridge
United Kingdom
Academia/ Research Institution
NA
NA
43
3
https://training.csx.cam.ac.uk/bioinformatics/event/2649674
 ELIXIR-UK
1022 5877 Villars Symposium 2018 Microbiome
ELIXIR-CH
12.09.2018
 14.09.2018
3.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
SIB
Villars-sur-Ollon
Switzerland
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
NA
NA
22
4
https://biologie.cuso.ch/index.php?id=1128&tx_displaycontroller%5BshowUid%5D=409...
 ELIXIR-CH
1023 5878 Singularity containers: usage in HPC infrastructure
ELIXIR-CH
12.09.2018
 12.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
SIB
Basel
Switzerland
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
NA
NA
10
1
https://www.sib.swiss/training/course/sciCORE-Singularity-Sep2018
 ELIXIR-CH
1024 5924 Implementation of Data Management Plans & Data Stewardship in practice
ELIXIR-CZ
ELIXIR-LU
ELIXIR-NL
ELIXIR-SI
11.09.2018
 11.09.2018
1.00 Days
Knowledge exchange workshop
EXCELERATE
Athens
Greece
WP2
WP3
WP11 - eLearning
Academia/ Research Institution
NA
NA
10
4
https://docs.google.com/document/d/1tPhfUhV_HAhlHIm_mWXbUl3UpS_1npUwSLDgfOMmWU0/...
 ELIXIR-CZ
1025 6563 Statistics for Biologists in R
ELIXIR-UK
10.09.2018
 11.09.2018
2.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Cambridge
Cambridge
United Kingdom
Academia/ Research Institution
NA
NA
38
1
https://training.csx.cam.ac.uk/bioinformatics/event/2601252
 ELIXIR-UK
1026 6293 Introduction to Bioinformatics using NGS data
ELIXIR-SE
10.09.2018
 14.09.2018
5.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
NBIS
Uppsala
Sweden
Academia/ Research Institution
NA
NA
25
14
https://scilifelab.github.io/courses/ngsintro/1609/
 ELIXIR-SE
1027 6069 Galaxy workshop - ECCB 2018
ELIXIR-DE
10.09.2018
 10.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Freiburg
Athens
Greece
Academia/ Research Institution
NA
Galaxy
20
2
https://www.denbi.de/training-archive-sorted-according-by-date/126-galaxy-worksh...
 ELIXIR-DE
1028 6068 From an application to a fully integrated workflow – Comprehensive software engineering with SeqAn - ECCB 2018
ELIXIR-DE
09.09.2018
 09.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
FU Berlin
Athens
Greece
Academia/ Research Institution
NA
NA
4
2
https://www.denbi.de/training-archive-sorted-according-by-date/127-from-an-appli...
 ELIXIR-DE
1029 6066 Modern and scalable tools for efficient analysis of very large metagenomic datasets - ECCB2018
ELIXIR-DE
08.09.2018
 08.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
CeBiTec
Athens
Greece
Academia/ Research Institution
NA
Marine Metagenomics
24
7
https://www.denbi.de/training-archive-sorted-according-by-date/133-modern-and-sc...
 ELIXIR-DE
1030 6067 Computational Mass Spectrometry with OpenMS - From Algorithms to Integrated Workflows - ECCB 2018
ELIXIR-DE
08.09.2018
 08.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Tübingen
Athens
Greece
Academia/ Research Institution
NA
Proteomics
Metabolomics
4
3
https://www.denbi.de/training-archive-sorted-according-by-date/130-computational...
 ELIXIR-DE
1031 6562 An Introduction to Solving Biological Problems with Python
ELIXIR-UK
06.09.2018
 07.09.2018
2.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Cambridge
Cambridge
United Kingdom
Academia/ Research Institution
NA
NA
32
2
https://training.csx.cam.ac.uk/bioinformatics/event/2605767
 ELIXIR-UK
1032 6065 Introduction data analysis in Python
ELIXIR-DE
06.09.2018
 07.09.2018
2.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
EMBL
Heidelberg
Germany
Academia/ Research Institution
NA
NA
20
6
https://www.denbi.de/training-archive-sorted-according-by-date/125-introduction-...
 ELIXIR-DE
1033 6064 Galaxy for Proteomics
ELIXIR-DE
05.09.2018
 05.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Freiburg
Freiburg
Germany
Academia/ Research Institution
NA
Galaxy
15
6
https://www.denbi.de/training-archive-sorted-according-by-date/124-galaxy-for-pr...
 ELIXIR-DE
1034 6063 RNA-Seq data analysis with Galaxy for clinical applications - GMDS 2018
ELIXIR-DE
04.09.2018
 04.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Rostock
Osnabrück
Germany
Academia/ Research Institution
NA
Galaxy
5
2
https://www.denbi.de/training-archive-sorted-according-by-date/91-rna-seq-data-a...
 ELIXIR-DE
1035 5876 NGS bioinformatics quality control and variant annotation for cancer diagnosis
ELIXIR-CH
04.09.2018
 04.09.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
SIB
Bern
Switzerland
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
NA
NA
27
3
https://www.sib.swiss/training/course/2018-09-ngs-clinical-qc-annot
 ELIXIR-CH
1036 6561 Introduction to RNA-seq data analysis
ELIXIR-UK
03.09.2018
 05.09.2018
3.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Cambridge
Cambridge
United Kingdom
Academia/ Research Institution
NA
NA
47
5
https://training.csx.cam.ac.uk/bioinformatics/event/2605748
 ELIXIR-UK
1037 6061 de.NBI Summer School 2018
ELIXIR-DE
03.09.2018
 07.09.2018
5.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
Jakobs University Bremen
Braunschweig
Germany
Academia/ Research Institution
NA
NA
18
15
https://www.denbi.de/training-archive-sorted-according-by-date/122-de-nbi-summer...
 ELIXIR-DE
1038 6062 CIBI - KNIME Cluster Hackathon
ELIXIR-DE
03.09.2018
 07.09.2018
5.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Konstanz
Konstanz
Germany
Academia/ Research Institution
NA
NA
9
2
https://www.denbi.de/training-archive-sorted-according-by-date/123-cibi-knime-cl...
 ELIXIR-DE
1039 5875 Comparative Genomics
ELIXIR-CH
03.09.2018
 05.09.2018
3.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
SIB
Lausanne
Switzerland
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
NA
NA
19
3
https://www.sib.swiss/training/course/2018-09-comparative-genomics
 ELIXIR-CH
1040 6292 Introduction to Bioinformatics usign NGS data
ELIXIR-SE
27.08.2018
 31.08.2018
5.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
NBIS, SciLifeLab
Uppsala
Sweden
Academia/ Research Institution
NA
NA
25
10
https://www.scilifelab.se/education/courses/
 ELIXIR-SE
1041 6236 summer school
ELIXIR-NL
ELIXIR-BE
26.08.2018
 31.08.2018
6.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
VIB Vlaams Instituut voor Biotechnologie, BioSB
Leuven
Belgium
Academia/ Research Institution
Industry
Healthcare
Non-Profit Organisation
NA
NA
42
3
https://wiki.bits.vib.be/index.php/NGS_data_analysis#Summer_school_2018
 ELIXIR-NL
1042 5771 NGS Analysis Summer School
ELIXIR-BE
ELIXIR-NL
26.08.2018
 31.08.2018
6.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
VIB, BioSB
Leuven
Belgium
Academia/ Research Institution
Non-Profit Organisation
NA
NA
42
3
https://wiki.bits.vib.be/index.php/NGS_data_analysis#Summer_school_2018
 ELIXIR-BE
1043 6186 ELIXIR/CODATA-RDA Advanced Bioinformatics Workshop
ELIXIR-GR
ELIXIR-NL
20.08.2018
 24.08.2018
5.00 Days
Training - face to face
ELIXIR Node
CODATA-RDA, DTL, CERTH, H3ABioNet, GOBLET
Trieste
Italy
Academia/ Research Institution
NA
NA
24
3
http://codata-rda-advanced-bioinformatics-2018.readthedocs.io
 ELIXIR-GR
1044 5871 Advanced Statistics: Statistical Modeling
ELIXIR-CH
20.08.2018
 23.08.2018
4.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
SIB Swiss Institute of Bioinformatics
Lausanne
Switzerland
Academia/ Research Institution
Industry
Healthcare
Non-Profit Organisation
NA
NA
25
3
https://www.sib.swiss/training/course/2018-08-advanced-stats
 ELIXIR-CH
1045 5772 Train the Trainer
ELIXIR-BE
20.08.2018
 21.08.2018
2.00 Days
Training - face to face
EXCELERATE
VIB Vlaams Instituut voor Biotechnologie
Antwerp
Belgium
WP11 - TtT
Academia/ Research Institution
NA
NA
11
2
https://www.eventbrite.com/e/elixir-excelerate-train-the-trainer-registration-45...
 ELIXIR-BE
1046 6056 GTN collaboration fest on metagenomics (online)
ELIXIR-DE
17.08.2018
 17.08.2018
1.00 Days
Training - elearning
Non-ELIXIR/ Non-EXCELERATE funds
University of Freiburg
Online
Online
Academia/ Research Institution
NA
Marine Metagenomics
20
2
https://www.denbi.de/training-archive-sorted-according-by-date/2018/121-gtn-coll...
 ELIXIR-DE
1047 6055 Microbiome Analysis with QIIME2 - ISME17
ELIXIR-DE
15.08.2018
 15.08.2018
1.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Bremen
Leipzig
Germany
Academia/ Research Institution
NA
Marine Metagenomics
30
1
https://www.denbi.de/training-archive-sorted-according-by-date/2018/120-microbio...
 ELIXIR-DE
1048 6560 Multiple biofluid and tissue types, from sample preparation to analysis strategies
ELIXIR-UK
23.07.2018
 25.07.2018
3.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
Birmingham Metabolomics Training Centre University of Birmingham
Birmingham
United Kingdom
Academia/ Research Institution
NA
NA
1
4
https://www.birmingham.ac.uk/facilities/metabolomics-training-centre/course-list...
 ELIXIR-UK
1049 6054 Data Science for Life Science
ELIXIR-DE
23.07.2018
 25.07.2018
3.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
University of Konstanz
Konstanz
Germany
Academia/ Research Institution
NA
NA
10
2
https://www.denbi.de/training-archive-sorted-according-by-date/2018/119-data-sci...
 ELIXIR-DE
1050 6268 Programming in Python for Biologists
ELIXIR-PT
23.07.2018
 27.07.2018
5.00 Days
Training - face to face
Non-ELIXIR/ Non-EXCELERATE funds
Instituto Gulbenkian de Ciência / BioData.pt
Oeiras
Portugal
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
NA
NA
18
3
http://gtpb.igc.gulbenkian.pt/bicourses/2018/PPB18/
 ELIXIR-PT
CSV